So last time time I reverted to a snapshot I took before the upgrade, as it didn't seem to be working. I think I just didn't wait long enough
Last night at around 10PM I upgraded to the latest container version, and saw very low IO but a lot of CPU, just like before. I monitored the directory with the database in and saw the processor.db-shm and processor.db-wal growing in size, so clearly something was happening
This morning, still no UI so I figured it failed, but checking iotop I now see 250MB/s of disk read, so it must still be working, but taking forever